Qualimap is a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data.
The STATegraEMS is an EMS designed for storage and annotation of complex NGS and omics experiments (proteomics and metabolomics data).
MORE is a method which facilitate the task of applying GLMs models to multi-omic data. The goal of MORE is to model gene expression as a function of experimental variables.
A Multiomic integration approach.
An end-to-end pipeline designed for the study of isoform co-usage networks using single-cell RNA-seq data (scRNA-seq).
NOISeq is a non-parametric approach for the identification of differentially expressed genes from count data or previously normalized count data.
maSigPro is a statistical procedure to identify genes that show different gene expression profiles across analytical groups in time-course experiments.
Method for the multivariate analysis of multifactorial gene expression datasets