Genomics of Gene Expression

163 entries « 1 of 9 »
163.

Figueiredo, C C; Balzano-Nogueira, L; Bisinotto, D Z; Ruiz, A Revilla; Duarte, G A; Conesa, A; Galvão, K N; Bisinotto, R S

Differences in uterine and serum metabolome associated with metritis in dairy cows Journal Article

In: J Dairy Sci, vol. 106, no. 5, pp. 3525–3536, 2023, ISSN: 1525-3198.

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162.

Pillon, Nicolas J; Puig, Laura Sardón; Altıntaş, Ali; Kamble, Prasad G; Casaní-Galdón, Salvador; Gabriel, Brendan M; Barrès, Romain; Conesa, Ana; Chibalin, Alexander V; Näslund, Erik; Krook, Anna; Zierath, Juleen R

Palmitate impairs circadian transcriptomics in muscle cells through histone modification of enhancers Journal Article

In: Life Sci Alliance, vol. 6, no. 1, 2023, ISSN: 2575-1077.

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161.

Thompson, Sharon C; Ford, Amanda L; Moothedan, Elijah J; Stafford, Lauren S; Garrett, Timothy J; Dahl, Wendy J; Conesa, Ana; Gonzalez, Claudio F; Lorca, Graciela L

Identification of food and nutrient components as predictors of colonization Journal Article

In: Front Nutr, vol. 10, pp. 1118679, 2023, ISSN: 2296-861X.

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160.

Pardo-Palacios, Francisco J.; Arzalluz-Luque, Angeles; Kondratova, Liudmyla; Salguero, Pedro; Mestre-Tomás, Jorge; Amorín, Rocío; Estevan-Morió, Eva; Liu, Tianyuan; Nanni, Adalena; McIntyre, Lauren; Tseng, Elizabeth; Conesa, Ana

SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms Journal Article

In: bioRxiv, 2023.

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159.

de Hegedüs, Rocío Amorín; Conesa, Ana; Foster, Jamie S

Integration of multi-omics data to elucidate keystone unknown taxa within microbialite-forming ecosystems Journal Article

In: Front Microbiol, vol. 14, pp. 1174685, 2023, ISSN: 1664-302X.

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158.

Pérez-Benavente, Beatriz; Fathinajafabadi, Alihamze; de la Fuente, Lorena; Gandía, Carolina; Martínez-Férriz, Arantxa; Pardo-Sánchez, José Miguel; Milián, Lara; Conesa, Ana; Romero, Octavio A; Carretero, Julián; Matthiesen, Rune; Jariel-Encontre, Isabelle; Piechaczyk, Marc; Farràs, Rosa

New roles for AP-1/JUNB in cell cycle control and tumorigenic cell invasion via regulation of cyclin E1 and TGF-β2 Journal Article

In: Genome Biol, vol. 23, no. 1, pp. 252, 2022, ISSN: 1474-760X.

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157.

Yang, Chih-Hsiang; Fagnocchi, Luca; Apostle, Stefanos; Wegert, Vanessa; Casaní-Galdón, Salvador; Landgraf, Kathrin; Panzeri, Ilaria; Dror, Erez; Heyne, Steffen; Wörpel, Till; Chandler, Darrell P; Lu, Di; Yang, Tao; Gibbons, Elizabeth; Guerreiro, Rita; Bras, Jose; Thomasen, Martin; Grunnet, Louise G; Vaag, Allan A; Gillberg, Linn; Grundberg, Elin; Conesa, Ana; Körner, Antje; ; Pospisilik, J Andrew

Independent phenotypic plasticity axes define distinct obesity sub-types Journal Article

In: Nat Metab, vol. 4, no. 9, pp. 1150–1165, 2022, ISSN: 2522-5812.

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156.

Pollo-Oliveira, Leticia; Davis, Nick K; Hossain, Intekhab; Ho, Peiying; Yuan, Yifeng; García, Pedro Salguero; Pereira, Cécile; Byrne, Shane R; Leng, Jiapeng; Sze, Melody; Blaby-Haas, Crysten E; Sekowska, Agnieszka; Montoya, Alvaro; Begley, Thomas; Danchin, Antoine; Aalberts, Daniel P; Angerhofer, Alexander; Hunt, John; Conesa, Ana; Dedon, Peter C; de Crécy-Lagard, Valérie

The absence of the queuosine tRNA modification leads to pleiotropic phenotypes revealing perturbations of metal and oxidative stress homeostasis in Escherichia coli K12 Journal Article

In: Metallomics, vol. 14, no. 9, 2022, ISSN: 1756-591X.

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155.

Weber, Cédric R; Rubio, Teresa; Wang, Longlong; Zhang, Wei; Robert, Philippe A; Akbar, Rahmad; Snapkov, Igor; Wu, Jinghua; Kuijjer, Marieke L; Tarazona, Sonia; Conesa, Ana; Sandve, Geir K; Liu, Xiao; Reddy, Sai T; Greiff, Victor

Reference-based comparison of adaptive immune receptor repertoires Journal Article

In: Cell Rep Methods, vol. 2, no. 8, pp. 100269, 2022, ISSN: 2667-2375.

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154.

de Crécy-Lagard, Valérie; de Hegedus, Rocio Amorin; Arighi, Cecilia; Babor, Jill; Bateman, Alex; Blaby, Ian; Blaby-Haas, Crysten; Bridge, Alan J; Burley, Stephen K; Cleveland, Stacey; Colwell, Lucy J; Conesa, Ana; Dallago, Christian; Danchin, Antoine; de Waard, Anita; Deutschbauer, Adam; Dias, Raquel; Ding, Yousong; Fang, Gang; Friedberg, Iddo; Gerlt, John; Goldford, Joshua; Gorelik, Mark; Gyori, Benjamin M; Henry, Christopher; Hutinet, Geoffrey; Jaroch, Marshall; Karp, Peter D; Kondratova, Liudmyla; Lu, Zhiyong; Marchler-Bauer, Aron; Martin, Maria-Jesus; McWhite, Claire; Moghe, Gaurav D; Monaghan, Paul; Morgat, Anne; Mungall, Christopher J; Natale, Darren A; Nelson, William C; O'Donoghue, Seán; Orengo, Christine; O'Toole, Katherine H; Radivojac, Predrag; Reed, Colbie; Roberts, Richard J; Rodionov, Dmitri; Rodionova, Irina A; Rudolf, Jeffrey D; Saleh, Lana; Sheynkman, Gloria; Thibaud-Nissen, Francoise; Thomas, Paul D; Uetz, Peter; Vallenet, David; Carter, Erica Watson; Weigele, Peter R; Wood, Valerie; Wood-Charlson, Elisha M; Xu, Jin

A roadmap for the functional annotation of protein families: a community perspective Journal Article

In: Database (Oxford), vol. 2022, 2022, ISSN: 1758-0463.

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153.

Rubio, Teresa; Chernigovskaya, Maria; Marquez, Susanna; Marti, Cristina; Izquierdo-Altarejos, Paula; Urios, Amparo; Montoliu, Carmina; Felipo, Vicente; Conesa, Ana; Greiff, Victor; Tarazona, Sonia

A Nextflow pipeline for T-cell receptor repertoire reconstruction and analysis from RNA sequencing data Journal Article

In: ImmunoInformatics, vol. 6, pp. 100012, 2022.

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152.

Nanni, Adalena V; Morse, Alison M; Newman, Jeremy R B; Choquette, Nicole E; Wedow, Jessica M; Liu, Zihao; Leakey, Andrew D B; Conesa, Ana; Ainsworth, Elizabeth A; McIntyre, Lauren M

Variation in leaf transcriptome responses to elevated ozone corresponds with physiological sensitivity to ozone across maize inbred lines Journal Article

In: Genetics, 2022, ISSN: 1943-2631.

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151.

Liu, Tianyuan; Salguero, Pedro; Petek, Marko; Martinez-Mira, Carlos; Balzano-Nogueira, Leandro; Ramšak, Živa; McIntyre, Lauren; Gruden, Kristina; Tarazona, Sonia; Conesa, Ana

PaintOmics 4: new tools for the integrative analysis of multi-omics datasets supported by multiple pathway databases Journal Article

In: Nucleic Acids Res, 2022, ISSN: 1362-4962.

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150.

Ugidos, Manuel; Nueda, María José; Prats-Montalbán, José M; Ferrer, Alberto; Conesa, Ana; Tarazona, Sonia

MultiBaC: An R package to remove batch effects in multi-omic experiments Journal Article

In: Bioinformatics, 2022.

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149.

Miller, Rachel M; Jordan, Ben T; Mehlferber, Madison M; Jeffery, Erin D; Chatzipantsiou, Christina; Kaur, Simi; Millikin, Robert J; Dai, Yunxiang; Tiberi, Simone; Castaldi, Peter J; Shortreed, Michael R; Luckey, Chance John; Conesa, Ana; Smith, Lloyd M; Mays, Anne Deslattes; Sheynkman, Gloria M

Enhanced protein isoform characterization through long-read proteogenomics Journal Article

In: Genome Biol., vol. 23, no. 1, pp. 69, 2022.

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148.

McIntyre, Lauren M; Huertas, Francisco; Morse, Alison M; Kaletsky, Rachel; Murphy, Coleen T; Kalia, Vrinda; Miller, Gary W; Moskalenko, Olexander; Conesa, Ana; Mor, Danielle E

GAIT-GM integrative cross-omics analyses reveal cholinergic defects in a C. elegans model of Parkinson's disease Journal Article

In: Sci. Rep., vol. 12, no. 1, pp. 3268, 2022.

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147.

Beltrame, Anna; Salguero, Pedro; Rossi, Emanuela; Conesa, Ana; Moro, Lucia; Bettini, Laura Rachele; Rizzi, Eleonora; DÁngió, Mariella; Deiana, Michela; Piubelli, Chiara; Rebora, Paola; Duranti, Silvia; Bonfanti, Paolo; Capua, Ilaria; Tarazona, Sonia; Valsecchi, Maria Grazia

Association between sex hormone levels and clinical outcomes in patients with COVID-19 admitted to hospital: An observational, retrospective, cohort study Journal Article

In: Front. Immunol., vol. 13, pp. 834851, 2022.

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146.

Zhang, Runxuan; Kuo, Richard; Coulter, Max; Calixto, Cristiane P G; Entizne, Juan Carlos; Guo, Wenbin; Marquez, Yamile; Milne, Linda; Riegler, Stefan; Matsui, Akihiro; Tanaka, Maho; Harvey, Sarah; Gao, Yubang; Wießner-Kroh, Theresa; Paniagua, Alejandro; Crespi, Martin; Denby, Katherine; Hur, Asa Ben; Huq, Enamul; Jantsch, Michael; Jarmolowski, Artur; Koester, Tino; Laubinger, Sascha; Li, Qingshun Quinn; Gu, Lianfeng; Seki, Motoaki; Staiger, Dorothee; Sunkar, Ramanjulu; Szweykowska-Kulinska, Zofia; Tu, Shih-Long; Wachter, Andreas; Waugh, Robbie; Xiong, Liming; Zhang, Xiao-Ning; Conesa, Ana; Reddy, Anireddy S N; Barta, Andrea; Kalyna, Maria; Brown, John W S

A high-resolution single-molecule sequencing-based Arabidopsis transcriptome using novel methods of Iso-seq analysis Journal Article

In: Genome Biol, vol. 23, no. 1, pp. 149, 2022, ISSN: 1474-760X.

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145.

Galvez-Fernandez, Marta; Sanchez-Saez, Francisco; Domingo-Relloso, Arce; Rodriguez-Hernandez, Zulema; Tarazona, Sonia; Gonzalez-Marrachelli, Vannina; Grau-Perez, Maria; Morales-Tatay, Jose M; Amigo, Nuria; Garcia-Barrera, Tamara; Gomez-Ariza, Jose L; Chaves, F Javier; Garcia-Garcia, Ana Barbara; Melero, Rebeca; Tellez-Plaza, Maria; Martin-Escudero, Juan C; Redon, Josep; Monleon, Daniel

Gene-environment interaction analysis of redox-related metals and genetic variants with plasma metabolic patterns in a general population from Spain: The Hortega Study Journal Article

In: Redox Biol, vol. 52, pp. 102314, 2022, ISSN: 2213-2317.

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144.

Arzalluz-Luque, Angeles; Salguero, Pedro; Tarazona, Sonia; Conesa, Ana

acorde unravels functionally interpretable networks of isoform co-usage from single cell data Journal Article

In: Nat Commun, vol. 13, no. 1, pp. 1828, 2022, ISSN: 2041-1723.

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163 entries « 1 of 9 »