Genomics of Gene Expression





Monday 14th  September 2015
8:00 Registration and welcome
SESSION 1. Multi-omics data
9:00-10:00 Keynote lecture Lennart Martens. Dig deep and dig greedily: what we awaken in omics data analyses.
10:00-10:30 STATegra talk Sonia Tarazona. Useful tools for the analysis of multi-omic data
10:30-11:00 COFFEE BREAK
11:00-11:30 STATegra talk David Gomez-Cabrero. Multi-omics clustering: understanding a system through functional modules
11:30-12:00 STATegra talk Johan Westernhuis. Low level data fusion of hetero ~omics data sets
12:00-12:30 Contributed talk Wiktor Jurkowski. Omics data integration via biology driven penalised regression
12:30-13:00 Contributed talk Costas Bouyioukos. Multivariate analysis of the interplay between genome architecture and gene expression
13:00-14:30 LUNCH & POSTERS
SESSION 2 . Integrated network analysis
14:30-15:00 Contributed talk Animesh Acharjee. Integration of metabolomics, lipidomics and clinical data by random forest
15:30-16:00 STATegra talk Theo Reijmers. From Data Fusion towards Network-based data integration
15:30-16:00 Contributed talk Lisette J.A. Kogelman. Gene co-expression networks within and across tissues in morbidly obese individuals
16:00-16:30 COFFEE BREAK
16:30-17:00 STATegra talk Venkateshan Kannan. Tracing the evolution of network transitions between distinct steady states from the integration of omics data
17:00-17:30 STATegra talk Ana Conesa. Comparison of temporal gene expression profiles with other omics to understand gene expression regulation
Tuesday 15th September
SESSION 3. Regulation of Gene expression
9:00-10:00 Keynote lecture Jason Ernst. Computational Methods for Large-scale Detection and Dissection of Human Regulatory Element
10:00-10:30 STATegra talk Sonia Tarazona. IntegRa: An omics integration pipeline to find gene expression regulatory programs and assess the effect of regulators
10:30-11:00 COFFEE BREAK
11:00-11:30 STATegra talk David Gomez-Cabrero. Regulatory mechanisms in chromatin domains and loops
11:30-12:00 Contributed talk Eric Triplett. Integrating DNA methylation and gene expression data to understand the role of epigenetics in the development of the soybean-Bradyrhizobium N2-fixing symbiosis
12:00-12:30 Contributed talk Stefano de Petris. INSPECT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA and 4SU-seq time course
12:30-13:00 STATegra talk Ricardo Ramirez. High-resolution epigenomic analysis of human myeloid differentiation reveals temporal and lineage-specific patterns of transcriptional regulation
13:00-14:30 LUNCH & POSTERS
 SESSION 4. Integrative pathway analysis.
14:30-15:00 STATegra talk Rafael Hernandez. Paintomics 3.0: Integrated visualization of multi omics data on KEGG pathways
15:00-15:30 Contributed talk Andrej Blejec. Animated graphics in R to reveal temporal dynamics of time course data
15:30-16:00 Contributed talk Eugenia Galeota. Ontology-based annotations and semantic relations in large scale (epi)genomics data
16:00-16:30 COFFEE BREAK
16:30-17:00 STATegra talk Patricia Sebastian. Integrated Path signal propagation analysis to link transcriptional regulation to metabolic changes
17:00-17:30 Contributed talk Abel Folch-Fortuny.Chemometric approaches for systems biology
17:30-18:00 Contributed talk Ugur Sezerman. Identification of methylation affected pathways in cancer
Wednesday 16th September
SESSION 5. Integrative disease models
9:00-10:00 Keynote lecture Martin Morgan. R / Bioconductor: Challenges and Rewards from Integrative Analysis of High-Throughput Genomic Data
10:00-10:30 STATegra talk Vincenzo Lagani. Integrative analysis of publicly available genomic and transcriptomic data: a case study in Acute Lymphoblastic Leukemia
10:30-11:00 COFFEE BREAK
11:00-11:30 Contributed talk Narsis A. Kiani. Phenotypic omic signature of Multiple Sclerosis
11:30-12:00 STATegra talk Gilad Silberberg. Reconstructing DNase-seq regulatory networks by improved transcription-factor binding prediction
12:00-12:30 Contributed talk Javier de las Rivas. Identification of expression patterns in the progession of disease stages by integration of transcriptomics data
12:30-14:00 LUNCH

SMODIA 2015 Program