Genomics of Gene Expression

163 entries « 7 of 9 »

Oppert, B.; Dowd, S. E.; Bouffard, P.; Li, L.; Conesa, A.; Lorenzen, M. D.; Toutges, M.; Marshall, J.; Huestis, D. L.; Fabrick, J.; Oppert, C.; Jurat-Fuentes, J. L.

Transcriptome Profiling of the Intoxication Response of Tenebrio molitor Larvae to Bacillus thuringiensis Cry3Aa Protoxin Journal Article

In: PLOS ONE, vol. 7, no. 4, 2012, ISSN: 1932-6203.

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Carcel-Trullols, J.; Aguilar-Gallardo, C.; Garcia-Alcalde, F.; Pardo-Cea, M. Angel; Dopazo, J.; Conesa, A.; Simon, C.

Transdifferentiation of MALME-3M and MCF-7 Cells toward Adipocyte-like Cells is Dependent on Clathrin-mediated Endocytosis Journal Article

In: SPRINGERPLUS, vol. 1, 2012, ISSN: 2193-1801.

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Leida, C.; Conesa, A.; Llacer, G.; Badenes, M. Luisa; Rios, G.

Histone modifications and expression of DAM6 gene in peach are modulated during bud dormancy release in a cultivar-dependent manner Journal Article

In: NEW PHYTOLOGIST, vol. 193, no. 1, pp. 67-80, 2012, ISSN: 0028-646X.

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Tarazona, S.; Prado-Lopez, S.; Dopazo, J.; Ferrer, A.; Conesa, A.

Variable selection for multifactorial genomic data Journal Article

In: CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, vol. 110, no. 1, pp. 113-122, 2012, ISSN: 0169-7439.

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Yung, S.; Ledran, M.; Moreno-Gimeno, I.; Conesa, A.; Montaner, D.; Dopazo, J.; Dimmick, I.; Slater, N. J.; Marenah, L.; Real, P. J.; Paraskevopoulou, I.; Bisbal, V.; Burks, D.; Santibanez-Koref, M.; Moreno, R.; Mountford, J.; Menendez, P.; Armstrong, L.; Lako, M.

Large-scale transcriptional profiling and functional assays reveal important roles for Rho-GTPase signalling and SCL during haematopoietic differentiation of human embryonic stem cells Journal Article

In: HUMAN MOLECULAR GENETICS, vol. 20, no. 24, pp. 4932-4946, 2011, ISSN: 0964-6906.

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Tarazona, S.; Garcia-Alcalde, F.; Dopazo, J.; Ferrer, A.; Conesa, A.

Differential expression in RNA-seq: A matter of depth Journal Article

In: GENOME RESEARCH, vol. 21, no. 12, pp. 2213-2223, 2011, ISSN: 1088-9051.

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Khalaf, A. A.; Gmitter, Jr.; Conesa, A.; Dopazo, J.; Moore, G. A.

Fortunella margarita Transcriptional Reprogramming Triggered by Xanthomonas citri subsp citri Journal Article

In: BMC PLANT BIOLOGY, vol. 11, 2011, ISSN: 1471-2229.

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Durban, J.; Juarez, P.; Angulo, Y.; Lomonte, B.; Flores-Diaz, M.; Alape-Giron, A.; Sasa, M.; Sanz, L.; Gutierrez, J. M.; Dopazo, J.; Conesa, A.; Calvete, J. J.

Profiling the venom gland transcriptomes of Costa Rican snakes by 454 pyrosequencing Journal Article

In: BMC GENOMICS, vol. 12, 2011, ISSN: 1471-2164.

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Goetz, S.; Arnold, R.; Sebastian-Leon, P.; Martin-Rodriguez, S.; Tischler, P.; Jehl, M.; Dopazo, J.; Rattei, T.; Conesa, A.

B2G-FAR, a species-centered GO annotation repository Journal Article

In: BIOINFORMATICS, vol. 27, no. 7, pp. 919-924, 2011, ISSN: 1367-4803.

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Garrido-Gomez, T.; Dominguez, F.; Lopez, J. Antonio; Camafeita, E.; Quinonero, A.; Martinez-Conejero, J. Antonio; Pellicer, A.; Conesa, A.; Simon, C.

Modeling Human Endometrial Decidualization from the Interaction between Proteome and Secretome Journal Article

In: JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM, vol. 96, no. 3, pp. 706-716, 2011, ISSN: 0021-972X.

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Garcia-Alcalde, F.; Garcia-Lopez, F.; Dopazo, J.; Conesa, A.

Paintomics: a web based tool for the joint visualization of transcriptomics and metabolomics data Journal Article

In: BIOINFORMATICS, vol. 27, no. 1, pp. 137-139, 2011, ISSN: 1367-4803.

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Conesa, A.; Prats-Montalban, J. M.; Tarazona, S.; Nueda, M. Jose; Ferrer, A.

A multiway approach to data integration in systems biology based on Tucker3 and N-PLS Journal Article

In: CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, vol. 104, no. 1, SI, pp. 101-111, 2010, ISSN: 0169-7439.

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Medina, I.; Carbonell, J.; Pulido, L.; Madeira, S. C.; Goetz, S.; Conesa, A.; Tarraga, J.; Pascual-Montano, A.; Nogales-Cadenas, R.; Santoyo, J.; Garcia, F.; Marba, M.; Montaner, D.; Dopazo, J.

Babelomics: an integrative platform for the analysis of transcriptomics, proteomics and genomic data with advanced functional profiling Journal Article

In: NUCLEIC ACIDS RESEARCH, vol. 38, no. 2, pp. W210-W213, 2010, ISSN: 0305-1048.

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Nueda, M. Jose; Carbonell, J.; Medina, I.; Dopazo, J.; Conesa, A.

Serial Expression Analysis: a web tool for the analysis of serial gene expression data Journal Article

In: NUCLEIC ACIDS RESEARCH, vol. 38, no. 2, pp. W239-W245, 2010, ISSN: 0305-1048.

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Nemeth, A.; Conesa, A.; Santoyo-Lopez, J.; Medina, I.; Montaner, D.; Peterfia, B.; Solovei, I.; Cremer, T.; Dopazo, J.; Laengst, G.

Initial Genomics of the Human Nucleolus Journal Article

In: PLOS GENETICS, vol. 6, no. 3, 2010, ISSN: 1553-7390.

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Prado-Lopez, S.; Conesa, A.; Arminan, A.; Martinez-Losa, M.; Escobedo-Lucea, C.; Gandia, C.; Tarazona, S.; Melguizo, D.; Blesa, D.; Montaner, D.; Sanz-Gonzalez, S.; Sepulveda, P.; Goetz, S.; O'Connor, J. Enrique; Moreno, R.; Dopazo, J.; Burks, D. J.; Stojkovic, M.

Hypoxia Promotes Efficient Differentiation of Human Embryonic Stem Cells to Functional Endothelium Journal Article

In: STEM CELLS, vol. 28, no. 3, pp. 407-418, 2010, ISSN: 1066-5099.

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Rattei, T.; Tischler, P.; Goetz, S.; Jehl, M.; Hoser, J.; Arnold, R.; Conesa, A.; Mewes, H.

SIMAP-a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters Journal Article

In: NUCLEIC ACIDS RESEARCH, vol. 38, no. 1, pp. D223-D226, 2010, ISSN: 0305-1048.

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Brumos, J.; Colmenero-Flores, J. M.; Conesa, A.; Izquierdo, P.; Sanchez, G.; Iglesias, D. J.; Lopez-Climent, M. F.; Gomez-Cadenas, A.; Talon, M.

Membrane transporters and carbon metabolism implicated in chloride homeostasis differentiate salt stress responses in tolerant and sensitive Citrus rootstocks Journal Article

In: FUNCTIONAL & INTEGRATIVE GENOMICS, vol. 9, no. 3, pp. 293-309, 2009, ISSN: 1438-793X.

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Nueda, M. Jose; Sebastian, P.; Tarazona, S.; Garcia-Garcia, F.; Dopazo, J.; Ferrer, A.; Conesa, A.

Functional assessment of time course microarray data Journal Article

In: BMC BIOINFORMATICS, vol. 10, 2009, ISSN: 1471-2105, (European Molecular Biology Network Conference, Martina, ITALY, SEP 18-20, 2008).

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Conesa, A.; Bro, R.; Garcia-Garcia, F.; Prats, J. M.; Gotz, S.; Kjeldahl, K.; Montaner, D.; Dopazo, J.

Direct functional assessment of the composite phenotype through multivariate projection strategies Journal Article

In: GENOMICS, vol. 92, no. 6, pp. 373-383, 2008, ISSN: 0888-7543.

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163 entries « 7 of 9 »