Genomics of Gene Expression

163 entries « 4 of 9 »
103.

Arzalluz-Luque, Ángeles; Ana, Conesa

Single-cell RNAseq for the study of isoforms---how is that possible? Journal Article

In: Genome Biology, vol. 19, no. 1, pp. 110, 2018, ISSN: 1474-760X.

Abstract | Links | BibTeX

102.

Colli-Dula, Reyna Cristina; Fang, Xiefan; Moraga-Amador, David; Albornoz-Abud, Nacira; Zamora-Bustillos, Roberto; Conesa, Ana; Zapata-Perez, Omar; Moreno, Diego; Hernandez-Nuñez, Emanuel

Transcriptome analysis reveals novel insights into the response of low-dose benzo(a)pyrene exposure in male tilapia Journal Article

In: Aquatic Toxicology, vol. 201, pp. 162 - 173, 2018, ISSN: 0166-445X.

Links | BibTeX

101.

Tarazona, Sonia; Balzano-Nogueira, Leandro; Conesa, Ana

Multiomics Data Integration in Time Series Experiments Journal Article

In: Comprehensive Analytical Chemistry, vol. 8, pp. 505-532, 2018.

Links | BibTeX

100.

Hernández-de-Diego, Rafael; Tarazona, Sonia; Martínez-Mira, Carlos; Balzano-Nogueira, Leandro; Furió-Tarí, Pedro; Jr Pappas, Georgios J; Conesa, Ana

PaintOmics 3: a web resource for the pathway analysis and visualization of multi-omics data Journal Article

In: Nucleic Acids Research, pp. gky466, 2018.

Links | BibTeX

99.

Babilonia, Joany; Conesa, Ana; Casaburi, Giorgio; Pereira, Cecile; Louyakis, Artemis S.; Reid, R. Pamela; Foster, Jamie S.

Comparative Metagenomics Provides Insight Into the Ecosystem Functioning of the Shark Bay Stromatolites, Western Australia Journal Article

In: Frontiers in Microbiology, vol. 9, pp. 1359, 2018, ISSN: 1664-302X.

Abstract | Links | BibTeX

98.

Delaye, Luis; Ruiz-Ruiz, Susana; Calderon, Enrique; Tarazona, Sonia; Conesa, Ana; Moya, Andrés

Evidence of the Red-Queen Hypothesis from Accelerated Rates of Evolution of Genes Involved in Biotic Interactions in Pneumocystis Journal Article

In: Genome Biology and Evolution, vol. 10, no. 6, pp. 1596-1606, 2018.

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97.

Zhu, Qile; Li, Xiaolin; Conesa, Ana; Pereira, Cécile

GRAM-CNN: a deep learning approach with local context for named entity recognition in biomedical text Journal Article

In: Bioinformatics, vol. 34, no. 9, pp. 1547-1554, 2018.

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96.

García-Molinero, Varinia; Garcíaa-Martínez, José; Reja, Rohit; Furió-Tarí, Pedro; Antúnez, Oreto; Vinayachandran, Vinesh; Conesa, Ana; Pugh, B. Franklin; Pérez-Ortín, José E.; Rodríguez-Navarro, Susana

The SAGA/TREX-2 subunit Sus1 binds widely to transcribed genes and affects mRNA turnover globally Journal Article

In: Epigenetics & Chromatin, vol. 11, no. 1, pp. 13, 2018.

Abstract | Links | BibTeX

95.

Tardaguila, Manuel; de la Fuente, Lorena; Marti, Cristina; Pereira, Cécile; Pardo-Palacios, Francisco Jose; del Risco, Hector; Ferrell, Marc; Mellado, Maravillas; Macchietto, Marissa; Verheggen, Kenneth; Edelmann, Mariola; Ezkurdia, Iakes; Vazquez, Jesus; Tress, Michael; Mortazavi, Ali; Martens, Lennart; Rodriguez-Navarro, Susana; Moreno-Manzano, Victoria; Conesa, Ana

SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification Journal Article

In: Genome Research, 2018.

Abstract | Links | BibTeX

94.

Nueda, María José; Martorell-Marugan, Jordi; Martí, Cristina; Tarazona, Sonia; Conesa, Ana

Identification and visualization of differential isoform expression in RNA-seq time series Journal Article

In: Bioinformatics, vol. 34, no. 3, pp. 524-526, 2018.

Links | BibTeX

93.

Martínez-Mira, Carlos; Conesa, Ana; Tarazona, Sonia

MOSim: Multi-Omics Simulation in R Journal Article Forthcoming

In: bioRxiv, pp. 421834, Forthcoming.

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92.

Kaeding, N.; Kaufhold, I.; Mueller, C.; Szaszak, M.; Shima, K.; Weinmaier, T.; Lomas, R.; Conesa, A.; Schmitt-Kopplin, P.; Rattei, T.; Rupp, J.

Growth of Chlamydia pneumoniae Is Enhanced in Cell swith Impaired Mitochondrial Function Journal Article

In: FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY, vol. 7, 2017, ISSN: 2235-2988.

Abstract | Links | BibTeX

91.

Newman, J. R. B.; Conesa, A.; Mika, M.; New, F. N.; Onengut-Gumuscu, S.; Atkinson, M. A.; Rich, S. S.; McIntyre, L. M.; Concannon, P.

Disease-specific biases in alternative splicing and tissue-specific dysregulation revealed by multitissue profiling of lymphocyte gene expression in type 1 diabetes Journal Article

In: GENOME RESEARCH, vol. 27, no. 11, pp. 1807-1815, 2017, ISSN: 1088-9051.

Abstract | Links | BibTeX

90.

Merino, Gabriela A.; Conesa, Ana; Fernández, Elmer A.

A benchmarking of workflows for detecting differential splicing and differential expression at isoform level in human RNA-seq studies Journal Article

In: Briefings in Bioinformatics, pp. bbx122, 2017.

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89.

Conesa, A.; Fernandez, M.; Exposito, R.; Campos, J.; Lamua, J. Ramon; del Pilar Navarro, M.; Rubio-Munoz, P.; Ahijado-Guzman, P.; Gonzalez, C. M.

Certolizumab Pegol Effectiveness and Retention Rate in Psoriatic Arthritis. Real Life Data Journal Article

In: ARTHRITIS & RHEUMATOLOGY, vol. 69, no. 10, 2017, ISSN: 2326-5191.

BibTeX

88.

Gomez-Cabrero, D.; Marabita, F.; Tarazona, S.; Cano, I.; Roca, J.; Conesa, A.; Sabatier, P.; Tegner, J.

Guidelines for Developing Successful Short Advanced Courses in Systems Medicine and Systems Biology Journal Article

In: CELL SYSTEMS, vol. 5, no. 3, pp. 168-175, 2017, ISSN: 2405-4712.

Abstract | Links | BibTeX

87.

Hernandez-de-Diego, R.; de Villiers, E. P.; Klingstrom, T.; Gourle, H.; Conesa, A.; Bongcam-Rudloff, E.

The eBioKit, a stand-alone educational platform for bioinformatics Journal Article

In: PLOS COMPUTATIONAL BIOLOGY, vol. 13, no. 9, 2017, ISSN: 1553-734X.

Abstract | Links | BibTeX

86.

Ramirez, R. N.; El-Ali, N. C.; Mager, M. A.; Wyman, D.; Conesa, A.; Mortazavi, A.

Dynamic Gene Regulatory Networks of Human Myeloid Differentiation Journal Article

In: CELL SYSTEMS, vol. 4, no. 4, pp. 416+, 2017, ISSN: 2405-4712.

Abstract | Links | BibTeX

85.

Sebastian-Leon, P.; Conesa, A.; Arnau, V.; Remohi, J.; Pellicer, A.; Simon, C.; Diaz-Gimeno, P.

Network Biology of Menstrual Cycle to Understand the Key Drivers of Endometrial Receptivity. Journal Article

In: REPRODUCTIVE SCIENCES, vol. 24, no. 1, pp. 162A, 2017, ISSN: 1933-7191, (64th Annual Scientific Meeting of the Society-for-Reproductive-Investigation (SRI), Orlando, FL, MAR 15-18, 2017).

BibTeX

84.

Ordonez-Baquera, P. Lucia; Gonzalez-Rodriguez, E.; Aguado-Santacruz, G. Armando; Rascon-Cruz, Q.; Conesa, A.; Moreno-Brito, V.; Echavarria, R.; Dominguez-Viveros, J.

Identification of miRNA from Bouteloua gracilis, a drought tolerant grass, by deep sequencing and their in silico analysis Journal Article

In: COMPUTATIONAL BIOLOGY AND CHEMISTRY, vol. 66, pp. 26-35, 2017, ISSN: 1476-9271.

Abstract | Links | BibTeX

163 entries « 4 of 9 »