154 entries « 2 of 8 »
134.

Tarazona, Sonia; Carmona, Héctor; Conesa, Ana; Llansola, Marta; Felipo, Vicente

A multi-omic study for uncovering molecular mechanisms associated with hyperammonemia-induced cerebellar function impairment in rats Journal Article

In: Cell Biology and Toxicology, vol. 37, no. 1, pp. 129–149, 2021.

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133.

Zamkovaya, Tatyana; Foster, Jamie S; de Crécy-Lagard, Valérie; Conesa, Ana

A network approach to elucidate and prioritize microbial dark matter in microbial communities Journal Article

In: The ISME Journal, vol. 15, no. 1, pp. 228–244, 2021.

BibTeX

132.

Arzalluz-Luque, Ángeles; Cabrera, Jose Luis; Skottman, Heli; Benguria, Alberto; Bolinches-Amorós, Arantxa; Cuenca, Nicolás; Lupo, Vincenzo; Dopazo, Ana; Tarazona, Sonia; Delás, Bárbara; Carballo, Miguel; Pascual, Beatriz; Hernan, Imma; Erceg, Slaven; Lukovic, Dunja

Mutant PRPF8 Causes Widespread Splicing Changes in Spliceosome Components in Retinitis Pigmentosa Patient iPSC-Derived RPE Cells Journal Article

In: Front Neurosci, vol. 15, pp. 636969, 2021, ISSN: 1662-4548.

Abstract | Links | BibTeX

131.

Balzano-Nogueira L Tarazona S, Gómez-Cabrero D

Harmonization of quality metrics and power calculation in multi-omic studies Journal Article

In: Nature Communications, vol. 11, no. 1, pp. 3092, 2020.

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130.

Ugidos, Manuel; Tarazona, Sonia; Prats-Montalbán, José M; Ferrer, Alberto; Conesa, Ana

MultiBaC: A strategy to remove batch effects between different omic data types Journal Article

In: Statistical Methods in Medical Research, vol. 0, no. 0, pp. 1-14, 2020, (PMID: 32131696).

Abstract | Links | BibTeX

129.

Nuño, Carme; Ugidos, Manuel; Tarazona, Sonia; Martín-Expósito, Manuel; Ferrer, Alberto; Rodríguez-Navarro, Susana; Conesa, Ana

A multi-omics dataset of heat-shock response in the yeast RNA binding protein Mip6 Journal Article

In: Scientific data, vol. 7, no. 1, pp. 69-69, 2020, ISSN: 2052-4463, (32109230[pmid]).

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128.

Casan'i-Galdón, Salvador; Pereira, Cecile; Conesa, Ana

Padhoc: a computational pipeline for pathway reconstruction on the fly Journal Article

In: Bioinformatics, vol. 36, no. Supplement_2, pp. i795–i803, 2020.

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127.

Ylla, Guillem; Liu, Tianyuan; Conesa, Ana

MirCure: a tool for quality control, filter and curation of microRNAs of animals and plants Journal Article

In: Bioinformatics, vol. 36, no. Supplement_2, pp. i618–i624, 2020.

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126.

Bhattarai, Krishna; Conesa, Ana; Xiao, Shunyuan; Peres, Natalia A; Clark, David G; Parajuli, Saroj; Deng, Zhanao

Sequencing and analysis of gerbera daisy leaf transcriptomes reveal disease resistance and susceptibility genes differentially expressed and associated with powdery mildew resistance Journal Article

In: BMC plant biology, vol. 20, no. 1, pp. 1–17, 2020.

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125.

Liu, Tianyuan; Balzano-Nogueira, Leandro; Lleo, Ana; Conesa, Ana

Transcriptional differences for COVID-19 Disease Map genes between males and females indicate a different basal immunophenotype relevant to the disease Journal Article

In: Genes, vol. 11, no. 12, pp. 1447, 2020.

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124.

Gardner, Christopher L; da Silva, Danilo R; Pagliai, Fernando A; Pan, Lei; Padgett-Pagliai, Kaylie A; Blaustein, Ryan A; Merli, Marcelo L; Zhang, Dan; Pereira, Cécile; Teplitski, Max; others,

Assessment of unconventional antimicrobial compounds for the control of ‘Candidatus liberibacter asiaticus’, the causative agent of citrus greening disease Journal Article

In: Scientific reports, vol. 10, no. 1, pp. 1–15, 2020.

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123.

de la Fuente, Lorena; Arzalluz-Luque, Ángeles; Tardáguila, Manuel; Risco, Héctor Del; Mart'i, Cristina; Tarazona, Sonia; Salguero, Pedro; Scott, Raymond; Lerma, Alberto; Alastrue-Agudo, Ana; others,

tappAS: a comprehensive computational framework for the analysis of the functional impact of differential splicing Journal Article

In: Genome biology, vol. 21, pp. 1–32, 2020.

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122.

Sana, T. G.; Lomas, R.; Gimenez, M. R.; Laubier, A.; Soscia, C.; Chauvet, C.; Conesa, A.; Voulhoux, R.; Ize, B.; Bleves, S.

Differential Modulation of Quorum Sensing Signaling through QslA in Pseudomonas aeruginosa Strains PAO1 and PA14 Journal Article

In: Journal of bacteriology, vol. 201, no. 21, 2019, ISSN: 10985530.

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121.

Jansen, Camden; Ramirez, Ricardo N; El-Ali, Nicole C; Gomez-Cabrero, David; Tegner, Jesper; Merkenschlager, Matthias; Conesa, Ana; Mortazavi, Ali

Building gene regulatory networks from scATAC-seq and scRNA-seq using Linked Self Organizing Maps Journal Article

In: PLOS Computational Biology, vol. 15, no. 11, pp. e1006555, 2019, ISSN: 1553-7358.

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120.

Martín‐Expósito, Manuel; Gas, Maria‐Eugenia; Mohamad, Nada; Nuño‐Cabanes, Carme; Tejada‐Colón, Ana; Pascual‐García, Pau; Fuente, Lorena; Chaves‐Arquero, Belén; Merran, Jonathan; Corden, Jeffry; Conesa, Ana; Pérez‐Cañadillas, José Manuel; Bravo, Jerónimo; Rodríguez‐Navarro, Susana

Mip6 binds directly to the Mex67 UBA domain to maintain low levels of Msn2/4 stress‐dependent mRNAs Journal Article

In: EMBO reports, 2019, ISSN: 1469-221X.

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119.

Tarazona, Sonia; Bernabeu, Elena; Carmona, Héctor; Gómez-Giménez, Belén; García-Planells, Javier; Leonards, Pim E. G.; Jung, Stephan; Conesa, Ana; Felipo, Vicente; Llansola, Marta

A Multiomics Study to Unravel the Effects of Developmental Exposure to Endosulfan in Rats: Molecular Explanation for Sex-Dependent Effects Journal Article

In: ACS Chemical Neuroscience, vol. 10, no. 10, pp. 4264–4279, 2019, ISSN: 19487193.

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118.

Gomez-Cabrero, David; Tarazona, Sonia; Ferreirós-Vidal, Isabel; Ramirez, Ricardo N.; Company, Carlos; Schmidt, Andreas; Reijmers, Theo; von Saint Paul, Veronica; Marabita, Francesco; Rodríguez-Ubreva, Javier; Garcia-Gomez, Antonio; Carroll, Thomas; Cooper, Lee; Liang, Ziwei; Dharmalingam, Gopuraja; van der Kloet, Frans; Harms, Amy C.; Balzano-Nogueira, Leandro; Lagani, Vincenzo; Tsamardinos, Ioannis; Lappe, Michael; Maier, Dieter; Westerhuis, Johan A.; Hankemeier, Thomas; Imhof, Axel; Ballestar, Esteban; Mortazavi, Ali; Merkenschlager, Matthias; Tegner, Jesper; Conesa, Ana

STATegra, a comprehensive multi-omics dataset of B-cell differentiation in mouse Journal Article

In: Scientific data, vol. 6, no. 1, pp. 256, 2019, ISSN: 20524463.

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117.

García-Solano, José; del Carmen Turpin-Sevilla, María; García-García, Francisco; Carbonell-Muñoz, Rosa; Torres-Moreno, Daniel; Conesa, Ana; Conesa-Zamora, Pablo

Differences in gene expression profiling and biomarkers between histological colorectal carcinoma subsets from the serrated pathway Journal Article

In: Histopathology, vol. 75, no. 4, pp. 496–507, 2019, ISSN: 13652559.

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116.

Conesa, Ana; Beck, Stephan

Making multi-omics data accessible to researchers Journal Article

In: Scientific data, vol. 6, no. 1, pp. 251, 2019, ISSN: 20524463.

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115.

Ferreirós-Vidal, Isabel; Carroll, Thomas; Zhang, Tianyi; Lagani, Vincenzo; Ramirez, Ricardo N.; Ing-Simmons, Elizabeth; Gómez-Valadés, Alicia G.; Cooper, Lee; Liang, Ziwei; Papoutsoglou, Georgios; Dharmalingam, Gopuraja; Guo, Ya; Tarazona, Sonia; Fernandes, Sunjay J.; Noori, Peri; Silberberg, Gilad; Fisher, Amanda G.; Tsamardinos, Ioannis; Mortazavi, Ali; Lenhard, Boris; Conesa, Ana; Tegner, Jesper; Merkenschlager, Matthias; Gomez-Cabrero, David

Feedforward regulation of Myc coordinates lineage-specific with housekeeping gene expression during B cell progenitor cell differentiation Journal Article

In: PLoS Biology, vol. 17, no. 4, 2019, ISSN: 15457885.

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154 entries « 2 of 8 »